GgaEX0001021 @ galGal4
Exon Skipping
Gene
ENSGALG00000000993 | GAPVD1
Description
GTPase activating protein and VPS9 domains 1 [Source:HGNC Symbol;Acc:HGNC:23375]
Coordinates
chr17:9616800-9617956:+
Coord C1 exon
chr17:9616800-9616887
Coord A exon
chr17:9617104-9617184
Coord C2 exon
chr17:9617834-9617956
Length
81 bp
Sequences
Splice sites
3' ss Seq
AGTTACTGTGTATTTTTCAGCTC
3' ss Score
8.06
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
ATTGATGAGCGAAAAGACAGCGATGATGAGAAGTCTGACAGAAACAAGCCATGGTGGAGAAAACGCTTTGTGTCTGCCATGCCCAAAG
Seq A exon
CTCCAATTCCATTTAGAAAGAAAGAAAAACAGGAAAAAGACAAAGATGATATGGTACCTGACAGATACTCGACACTACAAG
Seq C2 exon
ATGATCCAAGCCCGAGGCTCAGTGCGCAGGCTCAAGCTGCTGAAGATATTTTGGACAAATACAGGAATGCAATTAAGCGAACCAGTCCTAGTGAAGGAGCTTTAGTAAACTATGACAGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000993_MULTIEX2-1/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=1.000 C2=0.992
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCGAAAAGACAGCGATGA
R:
AGGACTGGTTCGCTTAATTGCA
Band lengths:
172-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]