GgaEX0001021 @ galGal3
Exon Skipping
Gene
ENSGALG00000000993 | GAPVD1
Description
NA
Coordinates
chr17:10338795-10339951:+
Coord C1 exon
chr17:10338795-10338882
Coord A exon
chr17:10339099-10339179
Coord C2 exon
chr17:10339829-10339951
Length
81 bp
Sequences
Splice sites
3' ss Seq
AGTTACTGTGTATTTTTCAGCTC
3' ss Score
8.06
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
ATTGATGAGCGAAAAGACAGCGATGATGAGAAGTCTGACAGAAACAAGCCATGGTGGAGAAAACGCTTTGTGTCTGCCATGCCCAAAG
Seq A exon
CTCCAATTCCATTTAGAAAGAAAGAAAAACAGGAAAAAGACAAAGATGATATGGTACCTGACAGATACTCGACACTACAAG
Seq C2 exon
ATGATCCAAGCCCGAGGCTCAGTGCGCAGGCTCAAGCTGCTGAAGATATTCTGGACAAATACAGGAATGCAATTAAGCGAACCAGTCCTAGTGAAGGAGCTTTAGTAAACTATGACAGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000993_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=1.000 C2=0.992
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCGAAAAGACAGCGATGA
R:
AGGACTGGTTCGCTTAATTGCA
Band lengths:
172-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]