DreEX0034279 @ danRer10
Exon Skipping
Gene
ENSDARG00000090183 | gapvd1
Description
GTPase activating protein and VPS9 domains 1 [Source:ZFIN;Acc:ZDB-GENE-040718-117]
Coordinates
chr8:34435940-34440995:-
Coord C1 exon
chr8:34440908-34440995
Coord A exon
chr8:34436556-34436627
Coord C2 exon
chr8:34435940-34436071
Length
72 bp
Sequences
Splice sites
3' ss Seq
GCTTTTGTTCATGTCCGCAGTGC
3' ss Score
8.87
5' ss Seq
AAGGTCTGC
5' ss Score
5.38
Exon sequences
Seq C1 exon
TCTGAGGACAGGAAGGACAGTGATGATGAGAAGTCTGATAGGAACAGACCCTGGTGGAAGAAGCGCTTTGTTCCTGCCATTCCTAAAG
Seq A exon
TGCCGATTGCCGGGCTTCGGAAGCGGGACAAGGCAGAAAAAGACGAGCAAGGAGCAGAGAGGGTCCCACAAG
Seq C2 exon
ATGAGCCTTCACTGCTCAGACAGAGCTCCAAAACCCAGTCAGCAGAGGCAATTATGGACAAGTACATCAGGTACATGGAGAAACGACCCGCACAGGCTGACGGAGCAACTGCTGGAGGTTATGTTGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090183-'22-32,'22-31,24-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.767 A=0.990 C2=0.961
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGACAGGAAGGACAGTGA
R:
CGGGTCGTTTCTCCATGTACC
Band lengths:
176-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]