RnoEX0037741 @ rn6
Exon Skipping
Gene
ENSRNOG00000017925 | Gapvd1
Description
GTPase activating protein and VPS9 domains 1 [Source:RGD Symbol;Acc:1307479]
Coordinates
chr3:13767568-13772785:-
Coord C1 exon
chr3:13772698-13772785
Coord A exon
chr3:13771789-13771869
Coord C2 exon
chr3:13767568-13767690
Length
81 bp
Sequences
Splice sites
3' ss Seq
TGACTTTATTTAATTTCCAGCTC
3' ss Score
8.17
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
ACTGAGGAGCGCAAGGACAGTGACGATGAGAGGTCAGACAGGAGCAGGCCTTGGTGGAGAAAGCGTTTTGTATCAGCTATGCCTAAAG
Seq A exon
CTCCTATACCATTTAGAAAGAAAGAAAAACAAGAAAAAGACAAAGATGATCTGGGGCCTGACAGATTCTCAACACTCACAG
Seq C2 exon
ACGAGCCCAGCCCTAGGCTCAGTGCACAAGCTCAGGTTGCGGAAGACATTCTGGACAAATACCGAAATGCCATTAAACGGACCAGCCCCAGTGAAGGAGCACTGGCAAATGATGAGAGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017925_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAAGGACAGTGACGATGAG
R:
CTGGGGCTGGTCCGTTTAATG
Band lengths:
170-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]