BtaEX0016163 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021636 | GPR155
Description
G protein-coupled receptor 155 [Source:HGNC Symbol;Acc:HGNC:22951]
Coordinates
chr2:22370059-22373329:+
Coord C1 exon
chr2:22370059-22370214
Coord A exon
chr2:22371747-22371830
Coord C2 exon
chr2:22373212-22373329
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTTGAAACTCTCTCTTTAAGATC
3' ss Score
7.06
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
ATAACCTCAGGGATGGTAATAAGCACCTTTGTGTCTGCACCGATCATGTACGTTTCTGCCTGGTTACTGACTTTTCCCACCATGGACCCTAAGCCACTGGCATATGCCATCCAGAATGTTAGTTTTGATATAAGTATTATCAGCCTGGTCTCCTTG
Seq A exon
ATCTGGTCTTTGGCTATTCTTCTTTTGAGCAAGAAATATAAACAGCTTCCTCATATGCTTACAACTAATTTACTCATCGCTCAG
Seq C2 exon
TCTATCGTCTGTGCTGGAATGATGATATGGAATTTTGTTAAAGAAAAAAATTTTGTTGGACAAATTCTGGTGTTTGTCTTATTGTACAGCTCCCTCTATAGCACCTACCTGTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021636-'6-8,'6-7,7-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0354713=Mem_trans=PD(10.9=36.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGGACCCTAAGCCACTGG
R:
AGGTGCTATAGAGGGAGCTGT
Band lengths:
183-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development