RnoEX0039617 @ rn6
Exon Skipping
Gene
ENSRNOG00000018485 | Gpr155
Description
G protein-coupled receptor 155 [Source:RGD Symbol;Acc:1309162]
Coordinates
chr3:60085792-60088437:-
Coord C1 exon
chr3:60088282-60088437
Coord A exon
chr3:60086657-60086740
Coord C2 exon
chr3:60085792-60085909
Length
84 bp
Sequences
Splice sites
3' ss Seq
CCGAACCTTTTATCTTCAAGATC
3' ss Score
6.15
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
ATAACCTCAGGAATGGTCATAAGTACATTTGTGTCTGCTCCAATCATGTATGTTTCTGCCTGGTTATTGACCTTTCCTACCATGGATGCTAAGCCACTGGCATATGCCATTCAGAATGTTAGCTTTGACATAAGCATTATCAGCCTGGTCTCCTTG
Seq A exon
ATCTGGTCTCTGTCTGTTCTTCTCTTGAGTAAGAAGTATAAGCAGCTTCCTCACATGCTCACAGCTAACCTACTCATCGCTCAG
Seq C2 exon
ACTATTGTTTGCGCTGGAATGGTGATATGGAATTTTGTTAAAGAAAAAAATTTTGTTGGACAAATTTTGGTGTTTGTTTTATTGTACAGCTCCCTGTACAGCACCTATCTATGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018485-'13-10,'13-9,14-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0354713=Mem_trans=PD(11.0=36.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGGATGCTAAGCCACTGG
R:
GGTGCTGTACAGGGAGCTGTA
Band lengths:
182-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]