DreEX6020724 @ danRer10
Exon Skipping
Gene
ENSDARG00000071086 | gpr155b
Description
G protein-coupled receptor 155b [Source:ZFIN;Acc:ZDB-GENE-110815-2]
Coordinates
chr6:10530991-10532769:-
Coord C1 exon
chr6:10532614-10532769
Coord A exon
chr6:10531397-10531480
Coord C2 exon
chr6:10530991-10531111
Length
84 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTGTGTTGTAGGTT
3' ss Score
11.95
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
GTGACCTCTGGTATGGTAATCAGCACGTTCCTGTCGGCGCCCATCATGTATGTGTCTGCATGGCTTTTGACCATTCCATGGATGGAGGCCTCGTTCCTGGTGAAGGAGCTGCAGGACGTCAGCTTTAACATCAGCATTGTCTGTCTGATAGCACTG
Seq A exon
GTTTGGACCCTTGCTGTCATGCTACTTAGTAAGAAGTTTCGGAGGATGCCACATATGTTTGCCACAAATCTGTTTTTAGCACAG
Seq C2 exon
CTCCTAGCTTGTATGTCGATGCTCTTTTGGAAGTTTGTCCTAAAGCAGGGCAGCGTATTTGGCCAAATTCTCACCTTTACACTACTTTATGGATCTCTCTACAGCACCTACGTGTGGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071086-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0354713=Mem_trans=PD(10.9=36.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCCCATCATGTATGTGTCT
R:
AATACGCTGCCCTGCTTTAGG
Band lengths:
179-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]