MmuEX6102190 @ mm10
Exon Skipping
Gene
ENSMUSG00000041762 | Gpr155
Description
G protein-coupled receptor 155 [Source:MGI Symbol;Acc:MGI:1915776]
Coordinates
chr2:73367481-73370141:-
Coord C1 exon
chr2:73369986-73370141
Coord A exon
chr2:73368314-73368397
Coord C2 exon
chr2:73367481-73367598
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTGAATCTTTTATCTTCAAGATC
3' ss Score
7.04
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
ATAACCTCAGGCATGGTAATAAGTACATTTGTGTCTGCTCCAATCATGTATGTTTCTGCCTGGTTATTAACCTTTCCTACCATGGATGCCAAGCCACTGGCGTATGCCATTCAGAATGTTAGCTTTGATATAAGTATTATCAGCCTGGTCTCCTTG
Seq A exon
ATCTGGTCCCTGTCTATTCTTCTCTTGAGTAAGAAATATAAGCAGCTCCCACATATGCTCACAGCGAACTTACTCATCGCTCAG
Seq C2 exon
ACTATTGTTTGTGCTGGAATGATGATATGGAATTTTGTTAAAGAAAAAAATTTTGTTGGACAAATTTTGGTGTTTGTTTTATTGTACAGCTCCCTGTACAGCACCTATCTGTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041762_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGATGCCAAGCCACTGG
R:
TAGGTGCTGTACAGGGAGCTG
Band lengths:
183-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types