GgaEX1027231 @ galGal4
Exon Skipping
Gene
ENSGALG00000014209 | GPR155
Description
G protein-coupled receptor 155 [Source:HGNC Symbol;Acc:HGNC:22951]
Coordinates
chr7:16387041-16389673:+
Coord C1 exon
chr7:16387041-16387196
Coord A exon
chr7:16388159-16388242
Coord C2 exon
chr7:16389553-16389673
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTTTATCTTGTCTGTTACAGATT
3' ss Score
11.97
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
ATTACCTCAGGCATGGTGATAAGCACTTTTGTGTCTGCACCTATCATGTATGTTTCTGCATGGCTTTTGACCATTCCATCTATGGACCCCAACCCACTGGCATCTGCTCTCCAGAATGTTAGCTTTGACATAAGTATTGTCAGCCTTGTTTCTTTG
Seq A exon
ATTTGGTCTCTTATTGTTGTTCTTCTCAGTAAGAAATACAAACAGCTTCCTCATATGATTACAACAAACCTACTTGTTGCTCAG
Seq C2 exon
TTTGTTGCTTGCATTGGAATGGTGATATGGAATTTCACTGTTAAACAAAAAGATGTAACTGTGCAGATCCTAGTATTTATATTTCTCTACAGTTCACTTTATAGCACCTACCTGTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014209-'7-7,'7-6,8-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0354713=Mem_trans=PD(10.9=36.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAGGCATGGTGATAAGCA
R:
CACCATTCCAATGCAAGCAACA
Band lengths:
176-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]