DreEX0035814 @ danRer10
Exon Skipping
Gene
ENSDARG00000090804 | gpr155a
Description
G protein-coupled receptor 155a [Source:ZFIN;Acc:ZDB-GENE-100922-89]
Coordinates
chr9:2486605-2491138:+
Coord C1 exon
chr9:2486605-2486760
Coord A exon
chr9:2488795-2488878
Coord C2 exon
chr9:2491018-2491138
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTCTGTGTCTGCAGGTG
3' ss Score
11.61
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTGACCTCAGGTATGGTGGTCAGCACGTTTCTGTCCGCCCCCATCATGTACGTGTCTGCGTGGTTGTTGACCATCCCGTGGATGGATTCAGCTCCGCTGGCCTCTGCTCTGCAGAACGTCAGCTTCGACATCAGCATTATCAGCCTCTTCGCACTG
Seq A exon
GTGTGGAGTCTCACAGTCATGATACTGAGCCGAAAATACCACAGGATTCCTCATATTTTCACCATAAACCTCTTTGTGGCGCAG
Seq C2 exon
CTATTAGTGTGTGTTGGGATGATCGTGTGGAACTTCGTGGTGAAGCAGGACAGTTTTGTGGCGCAAGTCTTGAGCTTTACTCTGCTGTACGGCTCTCTCTACAGCACCTACATCTGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090804-'6-6,'6-5,7-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0354713=Mem_trans=PD(11.2=36.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCATCATGTACGTGTCTGC
R:
AAACTGTCCTGCTTCACCACG
Band lengths:
174-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]