HsaEX0028335 @ hg19
Exon Skipping
Gene
ENSG00000163328 | GPR155
Description
G protein-coupled receptor 155 [Source:HGNC Symbol;Acc:22951]
Coordinates
chr2:175330513-175333795:-
Coord C1 exon
chr2:175333640-175333795
Coord A exon
chr2:175331272-175331355
Coord C2 exon
chr2:175330513-175330630
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTGAACCTTTTGTCTTCAAGATC
3' ss Score
7.52
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
ATAACCTCAGGGATGGTGATAAGCACATTTGTGTCTGCTCCCATCATGTACGTTTCTGCCTGGTTACTGACCTTTCCCACTATGGACCCTAAGCCATTGGCATATGCCATCCAGAATGTTAGTTTTGATATAAGTATTGTCAGCCTGATCTCCTTG
Seq A exon
ATCTGGTCTCTGGCTATTCTTCTTTTGAGTAAGAAATATAAACAGCTTCCTCATATGCTTACAACTAATTTACTCATTGCTCAG
Seq C2 exon
TCTATTGTCTGTGCTGGAATGATGATATGGAATTTTGTTAAAGAAAAAAATTTTGTTGGACAAATTTTGGTGTTTGTTCTATTGTACAGCTCCCTCTATAGCACCTACCTGTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163328-'8-9,'8-8,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0354713=Mem_trans=PD(11.0=36.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATGGACCCTAAGCCATTGG
R:
AGGTGCTATAGAGGGAGCTGT
Band lengths:
183-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)