BtaEX0018040 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000040076 | ILF3
Description
interleukin enhancer binding factor 3, 90kDa [Source:HGNC Symbol;Acc:HGNC:6038]
Coordinates
chr7:16378840-16380938:+
Coord C1 exon
chr7:16378840-16378987
Coord A exon
chr7:16380355-16380446
Coord C2 exon
chr7:16380843-16380938
Length
92 bp
Sequences
Splice sites
3' ss Seq
CTTATTCCATCCATGAATAGAAA
3' ss Score
5.53
5' ss Seq
CAGGTTTGC
5' ss Score
4.86
Exon sequences
Seq C1 exon
GCTGTCACAGATGACAAGTATGAAATACTCCAGTCTGTTGATGACGCTGCGATTGTGATAAAAAACACAAAAGAGCCTCCATTGTCCTTGACCATCCACCTGACCTCCCCTGTTGTCAGAGAAGAAATGGAGAAAGTATTAGCTGGAG
Seq A exon
AAACGCTATCAGTCAACGACCCCCCGGACGTTCTGGACAGGCAGAAATGCCTTGCTGCCTTGGCGTCCCTCCGACACGCCAAGTGGTTCCAG
Seq C2 exon
GCCAGAGCCAACGGGCTGAAGTCGTGTGTCATTGTCATCCGGGTCCTGAGGGACCTGTGCACCCGAGTGCCCACCTGGGGTCCCCTCAGAGGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040076_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(19.8=100)
A:
PF075289=DZF=FE(12.9=100)
C2:
PF075289=DZF=FE(12.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCAGTCTGTTGATGACGC
R:
GGACCCGGATGACAATGACAC
Band lengths:
168-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development