DreEX0039208 @ danRer10
Exon Skipping
Gene
ENSDARG00000105177 | ilf3b
Description
interleukin enhancer binding factor 3b [Source:ZFIN;Acc:ZDB-GENE-030131-587]
Coordinates
chr3:13703589-13707384:+
Coord C1 exon
chr3:13703589-13703739
Coord A exon
chr3:13705783-13705874
Coord C2 exon
chr3:13707289-13707384
Length
92 bp
Sequences
Splice sites
3' ss Seq
CTTATTCCACCTGCCAATAGAAA
3' ss Score
5.94
5' ss Seq
CAGGTTTGC
5' ss Score
4.86
Exon sequences
Seq C1 exon
CAGCTCGTCACTGAGGAAAAATATGATGTTAAACCGTGCATCCGCGATGCCACCATTGTCATCAAAAATGCCAAAGAGCCTCCGCTGACCCTCACCATTCACCTGACTTCACCACTCGTGAGGGAGGAGGTTGAGAAGCAGGCTGCTGGAG
Seq A exon
AAACGCTATCAGTCATCGATCCTCCGGATGTACTGGACAGGCAGAAATGCCTGACTGCCTTGGCGTCCCTCCGCCACGCCAAGTGGTTCCAG
Seq C2 exon
GCCAGGGCTAACGGACTGCGCTCCTGTGTGATCGTCATCCGCATCCTAAGGGACCTCTGTGCTCGTGTGCCCACTTGGTCTCCTCTGAGAGGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000105177_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=0.000 C2=0.086
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(83.3=100),PF075289=DZF=PU(5.1=5.9)
A:
PF075289=DZF=FE(12.0=100)
C2:
PF075289=DZF=FE(12.4=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTTAAACCGTGCATCCGC
R:
GGATGACGATCACACAGGAGC
Band lengths:
167-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]