RnoEX0043972 @ rn6
Exon Skipping
Gene
ENSRNOG00000022741 | Ilf3
Description
interleukin enhancer binding factor 3 [Source:RGD Symbol;Acc:619734]
Coordinates
chr8:22427890-22429885:+
Coord C1 exon
chr8:22427890-22428037
Coord A exon
chr8:22429322-22429413
Coord C2 exon
chr8:22429790-22429885
Length
92 bp
Sequences
Splice sites
3' ss Seq
CTTATTCCATCCATGAATAGAAA
3' ss Score
5.53
5' ss Seq
CAGGTTTGC
5' ss Score
4.86
Exon sequences
Seq C1 exon
ACTGTAACAGAAGACAAGTATGAAATACTCCAATCTGTGGATGATGCTGCGATTGTGATAAAAAACACAAAAGAGCCCCCCTTGTCCTTGACCATCCATCTGACCTCCCCTGTTGTCAGAGAAGAAATGGAGAAAGTATTAGCTGGAG
Seq A exon
AAACGCTATCAGTCAACGACCCCCCGGACGTTCTGGACAGGCAGAAATGCCTTGCTGCCTTGGCGTCCCTCCGACACGCCAAGTGGTTCCAG
Seq C2 exon
GCTAGAGCCAATGGGCTGAAGTCATGTGTCATTGTCATCCGTGTCCTAAGGGACTTGTGTACCCGAGTGCCCACCTGGGGTCCTCTCAGAGGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022741_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(19.7=100)
A:
PF075289=DZF=FE(12.0=100)
C2:
PF075289=DZF=FE(12.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGATGATGCTGCGATTGT
R:
ACTCGGGTACACAAGTCCCTT
Band lengths:
181-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]