HsaEX0031552 @ hg38
Exon Skipping
Gene
ENSG00000129351 | ILF3
Description
interleukin enhancer binding factor 3 [Source:HGNC Symbol;Acc:HGNC:6038]
Coordinates
chr19:10677163-10679192:+
Coord C1 exon
chr19:10677163-10677310
Coord A exon
chr19:10678613-10678704
Coord C2 exon
chr19:10679097-10679192
Length
92 bp
Sequences
Splice sites
3' ss Seq
CTTATTCCATCCATGAATAGAAA
3' ss Score
5.53
5' ss Seq
CAGGTTTGC
5' ss Score
4.86
Exon sequences
Seq C1 exon
GCTGTAACAGAAGACAAGTACGAAATACTGCAATCTGTCGACGATGCTGCGATTGTGATAAAAAACACAAAAGAGCCTCCATTGTCCCTGACCATCCACCTGACATCCCCTGTTGTCAGAGAAGAAATGGAGAAAGTATTAGCTGGAG
Seq A exon
AAACGCTATCAGTCAACGACCCCCCGGACGTTCTGGACAGGCAGAAATGCCTTGCTGCCTTGGCGTCCCTCCGACACGCCAAGTGGTTCCAG
Seq C2 exon
GCCAGAGCCAACGGGCTGAAGTCTTGTGTCATTGTGATCCGGGTCTTGAGGGACCTGTGCACTCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000129351_MULTIEX2-3/3=2-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.019 C2=0.102
Domain overlap (PFAM):
C1:
PF075289=DZF=PD(33.8=92.0)
A:
NO
C2:
PF075289=DZF=PD(13.8=46.9)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAATCTGTCGACGATGCT
R:
CCCTCAAGACCCGGATCACAA
Band lengths:
173-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development