HsaEX0031552 @ hg19
Exon Skipping
Gene
ENSG00000129351 | ILF3
Description
interleukin enhancer binding factor 3, 90kDa [Source:HGNC Symbol;Acc:6038]
Coordinates
chr19:10787839-10789868:+
Coord C1 exon
chr19:10787839-10787986
Coord A exon
chr19:10789289-10789380
Coord C2 exon
chr19:10789773-10789868
Length
92 bp
Sequences
Splice sites
3' ss Seq
CTTATTCCATCCATGAATAGAAA
3' ss Score
5.53
5' ss Seq
CAGGTTTGC
5' ss Score
4.86
Exon sequences
Seq C1 exon
GCTGTAACAGAAGACAAGTACGAAATACTGCAATCTGTCGACGATGCTGCGATTGTGATAAAAAACACAAAAGAGCCTCCATTGTCCCTGACCATCCACCTGACATCCCCTGTTGTCAGAGAAGAAATGGAGAAAGTATTAGCTGGAG
Seq A exon
AAACGCTATCAGTCAACGACCCCCCGGACGTTCTGGACAGGCAGAAATGCCTTGCTGCCTTGGCGTCCCTCCGACACGCCAAGTGGTTCCAG
Seq C2 exon
GCCAGAGCCAACGGGCTGAAGTCTTGTGTCATTGTGATCCGGGTCTTGAGGGACCTGTGCACTCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000129351_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF075289=DZF=PD(33.8=92.0)
A:
PF075289=DZF=FE(12.0=100)
C2:
PF075289=DZF=PD(30.8=48.5)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAATCTGTCGACGATGCT
R:
CCCTCAAGACCCGGATCACAA
Band lengths:
173-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)