DreINT0081279 @ danRer10
Intron Retention
Gene
ENSDARG00000105177 | ilf3b
Description
interleukin enhancer binding factor 3b [Source:ZFIN;Acc:ZDB-GENE-030131-587]
Coordinates
chr3:13703589-13705874:+
Coord C1 exon
chr3:13703589-13703739
Coord A exon
chr3:13703740-13705782
Coord C2 exon
chr3:13705783-13705874
Length
2043 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
CTTATTCCACCTGCCAATAGAAA
3' ss Score
5.94
Exon sequences
Seq C1 exon
CAGCTCGTCACTGAGGAAAAATATGATGTTAAACCGTGCATCCGCGATGCCACCATTGTCATCAAAAATGCCAAAGAGCCTCCGCTGACCCTCACCATTCACCTGACTTCACCACTCGTGAGGGAGGAGGTTGAGAAGCAGGCTGCTGGAG
Seq A exon
GTAGGTCTGAAATCACATGCCTTAGGGTTCCTCTAACCACCCTCACGACCCCCTGATACAGCAGATGGACTCGGGCAGGGATATTGTTTATTGGGCCTTCAATGGAGCTTGGGGATATTGTGTACAGAGTAGTGATGTCACACAGATGATGTTTAATGCCACCTGAAGTCTCACAGTTCCATGCTGAGTGCTGTTAACGTGTTGATGGCCCAATATACAGTAACATATCTAAGTGATGGGTAAAGCTTTAAGTGAAGTACTTTAAAGGAGAGTTTACTGAAGGCTTACTGAGAATTAAGAAACCAAATCACAAACCTTGTTGTTTGCATGTGTTCGTATAATGGAGAAGAAATGGAACGGTTTGCATTGCAGCAAAAATGAAAAGCAGAAGGATTGTCGAGCTCTGGTTTGATCGCCAGGGCTTGTTGACGGAGCCTTTCTCAAAGAGGCTGCACGGAGGGCAGGAGGGTTATAGATAATGCTAGACATTAGGATGAAGAATATAGACGAGACACGCTGTGGTGGTTTAAATGCTCACAGAAACTCACTAAATCAGTGTTTAATGGGCAACCTTTTCAAGTAAATTTCATTTTCAGGGCTGGTGTAGTGGATAGGAAAAGCAGATGCATAAAATAATTGACCTTTCGTTAAACCCTCCTTTACAGTCTTATCTAGGCAGCTTTTGCCTTTATTTGTAATTATTTTACTGTATATTTTTAATGTAATGCATTGCAATGTCAAAATCTGTTCTAATCTGTGAAAAAATATGCAATCCAGTTTATCCTCATTTCGAGTGCTGCTTACTGAATTGCATCAGTGCAGAGCAACAGTAATCAAGGGATGGCGGGTCTTAGCGAAAGGTCAATTGGAACCAAATTGAGGCCGAACTGAAAGCCTAGCCCTATCTGTGACCCCATGGTTAGTGACGCCTGCCTTTGACCATCACAAGCCATCAGTTTTGCTGCAGTGTGGACTTGTTTTGATCATACCTCTTGTGTATATGACTACTGCTGCCTGTGGTTCAAAATCTGATTCTCTCTGTCAAGCCTTCTAGTTTGTCAATTTTAGGGACGCTGGACCTTTGACCAACTGGACGCTCTCTGTCTCGGAAGGGGCAAGGCAGTGCACCCAGAAAAAAAAGCAAGGGGGCGAGGAGGAGGGGTTCCCCATGTCACGTCAATGAACAAATACAAGAATCTCATTTAATACAGTCACTCACTTTGCACCTTCATGCCTCAAATGCAGCCACACGGGCTCCGTTTCAAATCATAGTGAGCTATATTTAGTCATTATTTGGAAAGACTAGAAAGTGGTCACTACAATTAAAGGCAGCATCTAATATCCTACATTGCTATGGTTAAAATAGAGTACATTACACATGCATTTTCGCTGCTTTTTTAATAAGTTAAGTGCAATATCTTTAATTTTTGATTTAGTATGTTAGCTTGAATCTGTATTTTATTAATTTCCTCAAAAGTGGAAAAGTAGTTAATTTTAGTGGACTTGTTGTATTTTAGATATTTTGGGCTCACACATAATGAAAGGAACTCTGTCTGACTGGTCAACCTCATTTAGGTATTTTTAAATTATATGCTTTTTTTAATTGGTGTTTTTGCATCACAATTTGTTTGTATGGTTTTGATGCACCATCATTTTAACAGGTTGGTCAGAAGATTGAGAAACGCCACAAATGTTTTTCTACTTTTTACTGCTATTCAACTATTCCCATAATTGTGAGAAGTTAATGGCTCTTTCAAAGTCAATAGTGTATTGCTTTTGCAAATGAAATGTTGATCTCCTAGACTCAGCTGTTTTTATGCTGAAGTGTAGCATCACTTGGATTTGAAACGGAGCCATACGTTCAGCACTCATAGGTTTCCATCCTTGCCGTAGCACAGGAAGGGTTGTTTTTGTTGGGGGGCCTCCTCCTCCTCTTCCCTCCACTGCCTTTGGTAGGGGTTTCTGCCTCCTCCCCCCCGGCCATGAGACAGAAAAACCCCTTGGTCAAACTGTACCTTGTCTTCTTATTCCACCTGCCAATAG
Seq C2 exon
AAACGCTATCAGTCATCGATCCTCCGGATGTACTGGACAGGCAGAAATGCCTGACTGCCTTGGCGTCCCTCCGCCACGCCAAGTGGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000105177:ENSDART00000162317:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(83.3=100),PF075289=DZF=PU(5.1=5.9)
A:
NA
C2:
PF075289=DZF=PD(24.2=93.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]