HsaINT0080506 @ hg19
Intron Retention
Gene
ENSG00000129351 | ILF3
Description
interleukin enhancer binding factor 3, 90kDa [Source:HGNC Symbol;Acc:6038]
Coordinates
chr19:10787839-10789380:+
Coord C1 exon
chr19:10787839-10787986
Coord A exon
chr19:10787987-10789288
Coord C2 exon
chr19:10789289-10789380
Length
1302 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
CTTATTCCATCCATGAATAGAAA
3' ss Score
5.53
Exon sequences
Seq C1 exon
GCTGTAACAGAAGACAAGTACGAAATACTGCAATCTGTCGACGATGCTGCGATTGTGATAAAAAACACAAAAGAGCCTCCATTGTCCCTGACCATCCACCTGACATCCCCTGTTGTCAGAGAAGAAATGGAGAAAGTATTAGCTGGAG
Seq A exon
GTAGGGAGGCCGAGACACGCCGGCAGGACTTTGAAAATGTGGTGTTCCCTCACTATTCAAATGTGCTATTCAGTTTTAGACTGCTTTGGTATACGGTGTAGATTGACCACCTTTACTCTGAGATCACATCTCCCGTTGGCTTTGAGTACTTGGGAGTTTGACAAAACAGTCGCACTAAAAGTGAGTAGCACTTTTCATAGGGGACTGCACCATTTTCCTTTATCTTCATCCTTGAACGTTCTCAAACATGAATGTGGAAGTTGCTTTTCTATGGAGCCATTCTCTGGCTGTGGAGAAGTGTCCCTGGTGATTCCATGGTTTTAAAGATGAGACAACCAGATGGTTTCTGCATGAGCACCACGTTGGAGTTTACCAACAGCCTGTGCTGCAGCTGAGCTGAGGGCCTCTTCGTTTGTCCTCTGTCATGGCTCTTTTATCATTTAAAGTGACAGAAGCACAAAGAGCTGATACAGAGTTTTGGATAAAGTTTTAAACTGTTGTCCAATTTTTCAAACCACATCATTGGACCTCACGCTAATAATGTGCTCGCAGTCCATGGCCCGCCGCTCGCATGCCTGTCTTCAGGCCTTATCCAAACCCCTGGTGTGCAGATGGCAGAGAAGATAAACGCTCTGCTTGGCCGCAGCATAGGCTGGCATAGCGCCCTTGTTGCTGTTTACCTTTGGTTCTCATAGCTGATTCCGACTACCAAAGCCCTTCTAGTTGATCAACGTAGGGACGCTGGACCTTTGACCAACAGGACTCTCTCTGTCAAGGGCTGGGGCTAGGGCAGTCCCGCCTGGTGGGCGGAGTTGGTCCCCTTTGCTGCAGATGCCTTGGGATGGCTGTTGTGTGATGCAGAGAGGGAGTTCATTTCCTCTCCCTCGGCCTTTTTAAATTTTTTCCTATTGAACATTTTAGCATAGCTAATTTATTGGGAGAACATGGGGAGGAGGCAAGGGAAGAGGATTAGAAGATAGGCTCCACCTATCTCTCCCCTCCCTCATGAGATTATTCCTTTTAGAATAACTCCCCACTTTTGTTTTTATGTTTGTTTTATTTTTTCTTTTTCTTTCTTTTTTCTTTTTCTTTTTATTTTTGGAGGGGGCCTCCAATTTTTACAATTTCCTCACAGGGCAGAGTTGAATGTGCTCTAGTTTCTCCTTCCCTGGTCCAGGGTGGAGATGAATTCAGCTTCTGGGAAACTCAGCTGCCCTTTAGAAAGCTGCCACATCCCCTTTCCACCTGACAGAAACCCCTTGGTCAAACTGTGCCTTGTCTTCTTATTCCATCCATGAATAG
Seq C2 exon
AAACGCTATCAGTCAACGACCCCCCGGACGTTCTGGACAGGCAGAAATGCCTTGCTGCCTTGGCGTCCCTCCGACACGCCAAGTGGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000129351-ILF3:NM_017620:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF075289=DZF=PD(33.8=92.0)
A:
NA
C2:
PF075289=DZF=FE(12.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTAACAGAAGACAAGTACGA
R:
CTGGAACCACTTGGCGTGTC
Band lengths:
240-1542
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)