RnoINT0074300 @ rn6
Intron Retention
Gene
ENSRNOG00000022741 | Ilf3
Description
interleukin enhancer binding factor 3 [Source:RGD Symbol;Acc:619734]
Coordinates
chr8:22427890-22429413:+
Coord C1 exon
chr8:22427890-22428037
Coord A exon
chr8:22428038-22429321
Coord C2 exon
chr8:22429322-22429413
Length
1284 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
CTTATTCCATCCATGAATAGAAA
3' ss Score
5.53
Exon sequences
Seq C1 exon
ACTGTAACAGAAGACAAGTATGAAATACTCCAATCTGTGGATGATGCTGCGATTGTGATAAAAAACACAAAAGAGCCCCCCTTGTCCTTGACCATCCATCTGACCTCCCCTGTTGTCAGAGAAGAAATGGAGAAAGTATTAGCTGGAG
Seq A exon
GTAGGGAGGCCGAGAGAGGCCAGTAGAATATTGCAGACTTGGTGTTCCCTCTTGCTCAAATGTGCTATTCAGTTTTAGAGTGCTTTGATTAGAGGGTGTCAGTGTAGCTCTGACTGCCTTTACTCTAAGTTCATGTCTCCCCTTGGCCTTGTGTTCTTGGGAGTTTGACCCGACAGTGGCACTAAAAGTGAGTAGCACTTTGCATAGGGAGTGCACCGTTTTGTTTCTCTTACTCCTGGAATGATCTGGAATCTCCTTGTTAAACTTGTTTCCCTCTTGAAAAAAAGTATGTCCCCGGGATTCTTCCAGTGTTGCAGTGGTTAGCAGCAACCAGATGGCTTCTGTATGAACGAACGGCACGTAGGAGTAGTGATCGACTGGCCCTGCGGCACAGCCTGGGTGTTTTGTTTGGCCTCTGCCTGTGGCACTCTATGAGCTTTAGAGAGGCCAGGAGCAACAGCAGAGTTTTGGATAAGGTTTTAAACTATTGTGCTGTCTTCCAGCCCAGTCTGCACTTGAGATGCTAAGCTAATGCATCATCCACAATTCACTGGTCTCCCTGGAGGCCTCGTGGGCCTGCTATCAGGCCTTATCCAAATCCGTGAGAGCTGGCAGAGCCAAACGACAGCCTAGTTGTACCGCAGTGGAGGCTGACTTGTTGATTCCCCTTTGGCACACAGATCTGATGCCAGTGAACAAAGCCCTCTTAGCTTATCCACTCAGGGACGCTGGACCTTTGACCAACAGGACTCTCTCTGTCAAGGCCTGGGGCTAGGGCAGTCCTGCCTGGTGGGTGGAGGTGGTCCCCTGTGCTACAGGTGGATGCCTGTTTGTGAGAAGCAGAGAGGGAGTTCATTTCCACTCCCCCACCTCTTTTTTTTTTTTTGTTTTTTGTTTTTTTGTTTTTTTGTTTTTGTTTTTCCTATTGTAAATTCTAGCCTAGCTAATTTGTGGGGAGGAAGCAAGGGAATGGTCTACTAGAAGATAGGGTTAGCCTATCTTTTCCCTTCCCCACCAATTGTTCCTTGTAGAGTAACTTTTCTTTTTTGATTTTGTTTTTTGTTTCTGTGGTTTAAAATCTGGGAGAGGGCCTCCCAATTTTTCTGACTTCCTCTCAGAGCAGAGCTGATGGCACTTTAGCCTCTCCTTCCCTTGTCCAGGGTGGACACAAATTGAGATTGTGGGAGACTCAGCTGCCCTTTAGGAAGCTGCCACATCCCCTTTGTACCTGACAGAACCCCTTGGTCAAACTGTGCCTTGTCTTCTTATTCCATCCATGAATAG
Seq C2 exon
AAACGCTATCAGTCAACGACCCCCCGGACGTTCTGGACAGGCAGAAATGCCTTGCTGCCTTGGCGTCCCTCCGACACGCCAAGTGGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022741:ENSRNOT00000009354:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(19.7=100)
A:
NA
C2:
PF075289=DZF=FE(12.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAAGACAAGTATGAAATACTCCA
R:
CTGGAACCACTTGGCGTGTC
Band lengths:
234-1518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]