BtaINT0076049 @ bosTau6
Intron Retention
Gene
ENSBTAG00000040076 | ILF3
Description
interleukin enhancer binding factor 3, 90kDa [Source:HGNC Symbol;Acc:HGNC:6038]
Coordinates
chr7:16378840-16380446:+
Coord C1 exon
chr7:16378840-16378987
Coord A exon
chr7:16378988-16380348
Coord C2 exon
chr7:16380349-16380446
Length
1361 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
TGTCTTCTTATTCCATCCATGAA
3' ss Score
0.85
Exon sequences
Seq C1 exon
GCTGTCACAGATGACAAGTATGAAATACTCCAGTCTGTTGATGACGCTGCGATTGTGATAAAAAACACAAAAGAGCCTCCATTGTCCTTGACCATCCACCTGACCTCCCCTGTTGTCAGAGAAGAAATGGAGAAAGTATTAGCTGGAG
Seq A exon
GTAGGGAGGCTGAGAAAGGCCAGCAGGGCGTTGGCACTGTGGTATCCCCTCACTGTTAAAATGTGCTATGAAGTTTTAGATTGCTCTGATAAAAGGCTAGCGGTGTAGCTTTGACCACCTTTACTCGAGCTCACATCTCCCATTGGGTTTCCGTTCTGGGAGGTTGAAAAAACAGTTGCACAAAAAGTGAGTAGTACTTTTCCGAGCGGATTGCACCGCCCTAATCCTTGGATGTTCTTATCAGTGTTAAAGGTGTTTTTTCGGTTGAGCCAGTCTCTGGCCTTGGAAAAGCGTGTCCCCGGTGACTGTAGGGTTTTTAAAGTACGGAAGACAACCAGATGGTATCTGCATGAGTATCACGTTGGACTTGTGCAAACAGCTTGTGTTGCAGTAGAACCAGGGCCTCTTCGTTTGTCTTCTTCCACTGGCTGCTGTTACCTGTGGCCGTGATCGAGATGCAGAGAGCTGGGGCAGAGTTTTGGATAAAGTGTTTTCTAACAGTGGAGTAATTTTCAGACCAAATCCTGGAACCTCGGACAGTGCTCATGCTTTCACGATTCCGAGTCCGCCCAGGGCCCCTTGCGCATCTCTGGGTGGATGGGTGACTGGCCTTATCCAAACCCCTGACGCACAGGTGGTGGGAGCGACAAACGCCCCGGTTCTGCTGCAGCACAGGCTCAAGCGCACCCTTGTTGAGGTTCCTCAGTGCCCTTCGGTTCCGATACCGGTTCACCACCAGAGCCCTCTAGTTGATCAATTCAGGGACGCTGGACCTTTGACCAACAGGACTGACTCTGTCAAGGGCTGGGGCTGGGGCAGTCCCGCCTGGCGGGCGGAGGTGGTCCCCTTTGCCATGGTTGCCTCAGGGGATGACCTGTGGGAGGCAGAGAGGGAGTGCATTTCTACTCCCCCCACCTATTTTTTTTTTCCGGTTTTGGTTTTTGTTTTTTCTTTTTGCTAATGAATTTTTTAGCATAGCTCATTTACTGGGAGATCCTGGGGAGAGGAAGCAAGGTAACCATCTATTAGAAGATAGGGTCCACCTATCTGTCCCCCTCCCCCATGGGATTGTTCCTTTTAGAGTACCTTCTCACTTTGTTTTTGTTTTTCTTTTTGTTTTTTTTGTTTTTCTTTTTGGTTTTTTTTTTTTCTTCTTTTTTTTTTTGGAGGGGGCCTCTGATTTTTACAATCTCCTCTCGGGGCTGAGTTCAGTGTGCTCAAGCATCTCCTTCCCTGGTCAAGGGTGGAGAGGACTTGAGATTCTGGGAGCCTCAGCTGCCCTTTAGGAAGCTGCCACATCCCCTTTCCACCTGACAGAAACCCCTTGGTCAAACTGTACCTTGTCTTCTTATTCCATCCAT
Seq C2 exon
GAATAGAAACGCTATCAGTCAACGACCCCCCGGACGTTCTGGACAGGCAGAAATGCCTTGCTGCCTTGGCGTCCCTCCGACACGCCAAGTGGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040076:ENSBTAT00000018818:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(19.8=100)
A:
NA
C2:
PF075289=DZF=FE(12.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGATGACAAGTATGAAATACTCCA
R:
CTGGAACCACTTGGCGTGTC
Band lengths:
240-1601
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]