HsaINT0080506 @ hg38
Intron Retention
Gene
ENSG00000129351 | ILF3
Description
interleukin enhancer binding factor 3 [Source:HGNC Symbol;Acc:HGNC:6038]
Coordinates
chr19:10677163-10678704:+
Coord C1 exon
chr19:10677163-10677310
Coord A exon
chr19:10677311-10678612
Coord C2 exon
chr19:10678613-10678704
Length
1302 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
CTTATTCCATCCATGAATAGAAA
3' ss Score
5.53
Exon sequences
Seq C1 exon
GCTGTAACAGAAGACAAGTACGAAATACTGCAATCTGTCGACGATGCTGCGATTGTGATAAAAAACACAAAAGAGCCTCCATTGTCCCTGACCATCCACCTGACATCCCCTGTTGTCAGAGAAGAAATGGAGAAAGTATTAGCTGGAG
Seq A exon
GTAGGGAGGCCGAGACACGCCGGCAGGACTTTGAAAATGTGGTGTTCCCTCACTATTCAAATGTGCTATTCAGTTTTAGACTGCTTTGGTATACGGTGTAGATTGACCACCTTTACTCTGAGATCACATCTCCCGTTGGCTTTGAGTACTTGGGAGTTTGACAAAACAGTCGCACTAAAAGTGAGTAGCACTTTTCATAGGGGACTGCACCATTTTCCTTTATCTTCATCCTTGAACGTTCTCAAACATGAATGTGGAAGTTGCTTTTCTATGGAGCCATTCTCTGGCTGTGGAGAAGTGTCCCTGGTGATTCCATGGTTTTAAAGATGAGACAACCAGATGGTTTCTGCATGAGCACCACGTTGGAGTTTACCAACAGCCTGTGCTGCAGCTGAGCTGAGGGCCTCTTCGTTTGTCCTCTGTCATGGCTCTTTTATCATTTAAAGTGACAGAAGCACAAAGAGCTGATACAGAGTTTTGGATAAAGTTTTAAACTGTTGTCCAATTTTTCAAACCACATCATTGGACCTCACGCTAATAATGTGCTCGCAGTCCATGGCCCGCCGCTCGCATGCCTGTCTTCAGGCCTTATCCAAACCCCTGGTGTGCAGATGGCAGAGAAGATAAACGCTCTGCTTGGCCGCAGCATAGGCTGGCATAGCGCCCTTGTTGCTGTTTACCTTTGGTTCTCATAGCTGATTCCGACTACCAAAGCCCTTCTAGTTGATCAACGTAGGGACGCTGGACCTTTGACCAACAGGACTCTCTCTGTCAAGGGCTGGGGCTAGGGCAGTCCCGCCTGGTGGGCGGAGTTGGTCCCCTTTGCTGCAGATGCCTTGGGATGGCTGTTGTGTGATGCAGAGAGGGAGTTCATTTCCTCTCCCTCGGCCTTTTTAAATTTTTTCCTATTGAACATTTTAGCATAGCTAATTTATTGGGAGAACATGGGGAGGAGGCAAGGGAAGAGGATTAGAAGATAGGCTCCACCTATCTCTCCCCTCCCTCATGAGATTATTCCTTTTAGAATAACTCCCCACTTTTGTTTTTATGTTTGTTTTATTTTTTCTTTTTCTTTCTTTTTTCTTTTTCTTTTTATTTTTGGAGGGGGCCTCCAATTTTTACAATTTCCTCACAGGGCAGAGTTGAATGTGCTCTAGTTTCTCCTTCCCTGGTCCAGGGTGGAGATGAATTCAGCTTCTGGGAAACTCAGCTGCCCTTTAGAAAGCTGCCACATCCCCTTTCCACCTGACAGAAACCCCTTGGTCAAACTGTGCCTTGTCTTCTTATTCCATCCATGAATAG
Seq C2 exon
AAACGCTATCAGTCAACGACCCCCCGGACGTTCTGGACAGGCAGAAATGCCTTGCTGCCTTGGCGTCCCTCCGACACGCCAAGTGGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000129351:ENST00000407004:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.019
Domain overlap (PFAM):
C1:
PF075289=DZF=PD(33.8=92.0)
A:
NA
C2:
PF075289=DZF=FE(12.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTAACAGAAGACAAGTACGA
R:
CTGGAACCACTTGGCGTGTC
Band lengths:
240-1542
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development