BtaEX0018606 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002313 | ITPR2
Description
inositol 1,4,5-trisphosphate receptor type 2 [Source:RefSeq peptide;Acc:NP_776794]
Coordinates
chr5:83877129-83889602:+
Coord C1 exon
chr5:83877129-83877304
Coord A exon
chr5:83886025-83886189
Coord C2 exon
chr5:83889407-83889602
Length
165 bp
Sequences
Splice sites
3' ss Seq
GAATCTTTTCCTCCCTTTAGCTT
3' ss Score
8.65
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GTACTCTTTCACCGATGTTCTCAATTCTGCTTTGGATAGCAGTGGCAATCTGCACATCTATGCTGTTTTTCTTCTCCAAGCCTGTGGGTATTCGGCCATTTCTTGTGTCAGTAATGCTCAGATCAATATATACAATAGGTCTTGGGCCTACATTAATACTTCTTGGTGCAGCAAAT
Seq A exon
CTTTGTAATAAAATAGTGTTTCTGGTGAGTTTTGTTGGAAATCGGGGTACGTTCACCCGAGGCTACCGAGCGGTCATCCTGGATATGGCCTTTCTCTACCACGTGGCGTATGTCCTGGTTTGCATGCTGGGCCTCTTTGTCCATGAATTCTTCTATAGCTTCCTG
Seq C2 exon
CTTTTTGATTTGGTATATAGAGAAGAGACCCTGCTCAATGTCATAAAAAGTGTCACACGGAACGGCCGATCCATTATTCTAACTGCAGTTCTTGCCCTCATCCTTGTCTACCTGTTTTCCATTATTGGGTTCCTTTTTCTGAAGGATGACTTCACTATGGAGGTGGATAGGCTGAAAAACAGAACTCCCATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002313-'63-68,'63-67,64-68
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(0.4=1.7)
A:
PF0052026=Ion_trans=FE(23.8=100)
C2:
PF0052026=Ion_trans=FE(28.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTTGGATAGCAGTGGCAA
R:
ACAAGGATGAGGGCAAGAACTG
Band lengths:
256-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development