MmuEX6007945 @ mm10
Exon Skipping
Gene
ENSMUSG00000030287 | Itpr2
Description
inositol 1,4,5-triphosphate receptor 2 [Source:MGI Symbol;Acc:MGI:99418]
Coordinates
chr6:146171224-146180355:-
Coord C1 exon
chr6:146180180-146180355
Coord A exon
chr6:146173244-146173408
Coord C2 exon
chr6:146171224-146171419
Length
165 bp
Sequences
Splice sites
3' ss Seq
ACCTTCTTCCTCCCCTTTAGCTA
3' ss Score
9.91
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GCACACTCTCCCCGATGTTCTCAGTCCTCCTTTGGGTAGCAGTGGCGATCTGCACATCTATGCTGTTCTTCTTCTCCAAGCCCGTGGGCATCCGGCCATTCCTCGTGTCTGTCATGCTCAGATCGATATACACCATCGGTCTGGGGCCAACGCTAATACTACTTGGTGCTGCCAAT
Seq A exon
CTATGTAATAAAATCGTGTTCCTGGTGAGTTTTGTGGGAAACCGAGGCACATTCACCAGAGGCTACCGAGCAGTCATTCTGGACATGGCCTTTCTTTACCACGTGGCCTATGTCCTGGTTTGCATGCTTGGCCTCTTTGTCCACGAGTTCTTCTACAGCTTCCTG
Seq C2 exon
CTTTTTGATTTGGTATATAGAGAAGAGACCCTGCTGAATGTCATCAAAAGCGTCACACGGAACGGCCGCTCCATCATCCTGACCGCGGTCTTGGCTCTTATCTTGGTCTACCTGTTCTCCATCATCGGCTTCCTTTTCTTAAAGGACGACTTCACCATGGAGGTGGACAGACTGAAAAACAGAACTCCAGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030287-'89-81,'89-80,92-81=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(0.4=1.7)
A:
PF0052026=Ion_trans=FE(23.8=100)
C2:
PF0052026=Ion_trans=FE(28.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCGTGTCTGTCATGCTCA
R:
TCAGTCTGTCCACCTCCATGG
Band lengths:
252-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types