GgaEX1030903 @ galGal3
Exon Skipping
Gene
ENSGALG00000014071 | ITPR2
Description
NA
Coordinates
chr1:69854484-69858720:-
Coord C1 exon
chr1:69858545-69858720
Coord A exon
chr1:69856861-69857025
Coord C2 exon
chr1:69854484-69854679
Length
165 bp
Sequences
Splice sites
3' ss Seq
CCTTTCTTTACCCCCCACAGCTT
3' ss Score
8.96
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GCACACTTTCTCCGTTGATTTCGGTCCTCCTCTGGATAGCCGTGGCACTTTGTACAGCAATGCTGTTTTTCATCTCCAAGCCCGTTGGCATTCGACCCTTTCTGGTGTCTGTTATTCTCAGGTCTATATATACAATAGGGCTCGGTCCTACCTTGATACTTCTCGGTGCTGCTAAT
Seq A exon
CTTTGCAACAAAATAGTGTTCCTGGTGAGCTTTGTTGGAAACCGGGGAACTTTTACTCGTGGCTACAGAGCGGTCGTCATGGACATGGCTTTCCTCTATCACGTGGCATATGTCCTGGTCTGCATGCTGGGCCTCTGTGTGCACGAATTCTTCTACAGTTTCCTG
Seq C2 exon
CTGTTTGATCTAGTGTACAGAGAGGAGACTTTGCTAAATGTGATAAAAAGTGTTACCCGGAATGGTCGTTCCATCATCCTCACTGCAGTGCTAGCACTCATCCTGGTTTATCTCTTCTCCATCATTGGGTTCCTCTTCCTGAAGGACGACTTCATCATGGAGGTCGACAGGTTGAAAATCAGGACCCCTGTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014071-'56-62,'56-61,57-62=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(0.4=1.7)
A:
PF0052026=Ion_trans=FE(23.9=100)
C2:
PF0052026=Ion_trans=FE(28.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCGACCCTTTCTGGTGTCTGT
R:
ACCTGTCGACCTCCATGATGA
Band lengths:
257-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]