RnoEX0003586 @ rn6
Exon Skipping
Gene
ENSRNOG00000053339 | AABR07062512.1
Description
NA
Coordinates
chr4:180485200-180493153:-
Coord C1 exon
chr4:180492978-180493153
Coord A exon
chr4:180486127-180486291
Coord C2 exon
chr4:180485200-180485395
Length
165 bp
Sequences
Splice sites
3' ss Seq
CTACTTTCTCCCCCGTTTAGCTA
3' ss Score
8.43
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GTACGCTCTCCCCGCTGTTCTCAGCCCTCCTTTGGGTAGCAGTGGCGATCTGCACGTCTATGCTGTTCTTCTTCTCCAAGCCTGTGGGCATCCGGCCATTCCTTGTGTCTATCATGCTCAGATCAATATACACCATCGGTCTGGGGCCAACGCTAATACTTCTTGGTGCTGCCAAT
Seq A exon
CTATGCAATAAAATCGTGTTCCTGGTGAGTTTTGTGGGAAACCGAGGCACATTCACCCGAGGGTACCGAGCAGTCATTCTGGACATGGCCTTTCTTTACCACGTGGCCTATGTCTTGGTTTGCATGCTTGGCCTCTTCGTCCACGAGTTCTTCTACAGCTTCCTG
Seq C2 exon
CTTTTTGACTTGGTGTACAGAGAAGAGACCCTGCTGAACGTCATCAAAAGCGTCACACGGAATGGCCGCTCCATCATCCTGACTGCGGTCTTGGCTCTTATCCTGGTCTACCTGTTCTCCATCATCGGCTTCCTTTTCTTAAAGGATGACTTCACCATGGAGGTGGACAGATTGAAAAACAGAACTCCAGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053339-'3-6,'3-5,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(26.2=83.1)
A:
PF0052026=Ion_trans=FE(23.8=100)
C2:
PF0052026=Ion_trans=FE(28.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTCTCAGCCCTCCTTTGG
R:
AAGACCGCAGTCAGGATGATG
Band lengths:
254-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]