GgaEX1030903 @ galGal4
Exon Skipping
Gene
ENSGALG00000014071 | ITPR2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:HGNC Symbol;Acc:HGNC:6181]
Coordinates
chr1:67844478-67851610:-
Coord C1 exon
chr1:67851485-67851610
Coord A exon
chr1:67846855-67847019
Coord C2 exon
chr1:67844478-67844673
Length
165 bp
Sequences
Splice sites
3' ss Seq
CCTTTCTTTACCCCCCACAGCTT
3' ss Score
8.96
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ATAATCCACTCCTATTTTGGTTCTCAAGACACATCTCTCTCTGGGGAAGTATTTCCTTCAACCTTGCTGTATTCATCAACTTAGCAGTTGCTCTATTCTATCCCTTTGGAGATGATGGAGATGAAG
Seq A exon
CTTTGCAACAAAATAGTGTTCCTGGTGAGCTTTGTTGGAAACCGGGGAACTTTTACTCGTGGCTACAGAGCGGTCGTCATGGACATGGCTTTCCTCTATCACGTGGCATATGTCCTGGTCTGCATGCTGGGCCTCTGTGTGCACGAATTCTTCTACAGTTTCCTG
Seq C2 exon
CTGTTTGATCTAGTGTACAGAGAGGAGACTTTGCTAAATGTGATAAAAAGTGTTACCCGGAATGGTCGTTCCATCATCCTCACTGCAGTGCTAGCACTCATCCTGGTTTATCTCTTCTCCATCATTGGGTTCCTCTTCCTGAAGGACGACTTCATCATGGAGGTCGACAGGTTGAAAATCAGGACCCCTGTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014071_MULTIEX4-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0052026=Ion_trans=FE(23.9=100)
C2:
PF0052026=Ion_trans=FE(28.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGACACATCTCTCTCTGGGGA
R:
TCCTTCAGGAAGAGGAACCCA
Band lengths:
246-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]