BtaEX0018608 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002313 | ITPR2
Description
inositol 1,4,5-trisphosphate receptor type 2 [Source:RefSeq peptide;Acc:NP_776794]
Coordinates
chr5:83538585-83570578:+
Coord C1 exon
chr5:83538585-83538680
Coord A exon
chr5:83554025-83554069
Coord C2 exon
chr5:83570427-83570578
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTTTTGATTTTTAGCTT
3' ss Score
8.8
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GTAGTTCATCATGATCCATGCCGTGGGGGTGCAGGACAGTGGAACAGCTTGTTCAGATTTAAACATCTTGCAACTGGGAACTATTTAGCTGCAGAG
Seq A exon
CTTAACCCTGATTATCGAGATGCCCAAAATGAAGGAAAAAATGTG
Seq C2 exon
AGAGATGGGGATCTTCCAGCTTCAAAGAAGAAACGCCAGGCAGGGGAGAAGATCATGTACACTTTGGTCTCAGTCCCGCATGGAAATGACATTGCGTCGCTTTTCGAACTGGATGCCACGACTCTTCAGAGAGCAGACTGCCTGGTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002313_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.600 C2=0.196
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(15.4=100)
A:
PF0281514=MIR=FE(7.0=100)
C2:
PF0281514=MIR=FE(24.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGACAGTGGAACAGCTTGT
R:
CATGCGGGACTGAGACCAAAG
Band lengths:
147-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development