HsaEX0032570 @ hg19
Exon Skipping
Gene
ENSG00000123104 | ITPR2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:HGNC Symbol;Acc:6181]
Coordinates
chr12:26839414-26864201:-
Coord C1 exon
chr12:26864106-26864201
Coord A exon
chr12:26848539-26848583
Coord C2 exon
chr12:26839414-26839565
Length
45 bp
Sequences
Splice sites
3' ss Seq
ATTTTCCTTTGTTTTTCTAGCTT
3' ss Score
9.6
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GTGGTTCATCATGACCCATGCCGTGGGGGTGCAGGACAGTGGAACAGCTTGTTCAGATTTAAGCATCTTGCAACTGGAAACTATTTAGCTGCAGAG
Seq A exon
CTTAATCCTGATTATCGAGATGCCCAAAATGAAGGAAAAAATGTG
Seq C2 exon
AGAGATGGAGTCCCTCCAACTTCAAAGAAAAAACGCCAGGCAGGGGAGAAGATCATGTATACTTTGGTTTCAGTCCCGCATGGCAATGACATTGCATCCCTTTTTGAACTAGATGCCACAACTCTTCAGAGAGCTGACTGCCTGGTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123104-'15-19,'15-18,19-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.615 C2=0.233
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(15.4=100)
A:
PF0281514=MIR=FE(7.0=100)
C2:
PF0281514=MIR=FE(24.9=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATCATGACCCATGCCGTG
R:
ATGATCTTCTCCCCTGCCTGG
Band lengths:
148-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)