DreEX6064871 @ danRer10
Exon Skipping
Gene
ENSDARG00000011909 | itpr2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:ZFIN;Acc:ZDB-GENE-050419-192]
Coordinates
chr18:15996109-16005893:+
Coord C1 exon
chr18:15996109-15996204
Coord A exon
chr18:15998027-15998077
Coord C2 exon
chr18:16005745-16005893
Length
51 bp
Sequences
Splice sites
3' ss Seq
CACTTCTGGTTGTGTTTCAGGTG
3' ss Score
10.78
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTTGTCCACTATGACCCGTGTCGAGGAGGCGCTGGCCAGTGGAACAGCCTGTTTCGATTTAAACACCTCGCCACAGGTCACTACCTTGCAGCAGAG
Seq A exon
GTGAATCCTGATTTTAAAGATCGTACCGACAGTATAACCACAAAAAATGAG
Seq C2 exon
ACCAACACAGAGTCTTTGTACTCTAAAAAGAAGTGGCAGGCTGACAAGATCCCCTACACACTGGTTGCAGTGCCCCACGGCAATGACATCGCATCTCTCTTTGAACTGGATGCCACCACCTTACAGCGGGCAGACTGCCTGGTCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011909-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.353 C2=0.032
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(16.4=100)
A:
PF0281514=MIR=FE(8.5=100)
C2:
PF0281514=MIR=FE(24.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTATGACCCGTGTCGAGGAG
R:
CTTGTCAGCCTGCCACTTCTT
Band lengths:
137-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]