RnoEX6015620 @ rn6
Exon Skipping
Gene
ENSRNOG00000001804 | Itpr2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:RGD Symbol;Acc:69649]
Coordinates
chr4:180695608-180711240:-
Coord C1 exon
chr4:180711145-180711240
Coord A exon
chr4:180701050-180701094
Coord C2 exon
chr4:180695608-180695759
Length
45 bp
Sequences
Splice sites
3' ss Seq
CTGTTTGCTTTGTTTTTCAGCTT
3' ss Score
10.76
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GTGGTTCACCATGATCCATGCCGCGGAGGTGCAGGACAGTGGAACAGCCTGTTCAGGTTTAAGCATCTTGCAACTGGGAACTACTTAGCTGCAGAG
Seq A exon
CTTAACCCTGACTATCGAGATGCTCAAAATGAAGGAAAAACTGTG
Seq C2 exon
AGAGACGGGGAGCTTCCAACCTCAAAGAAAAAACGCCAGGCAGGGGAGAAGATCATGTACACGCTGGTCTCGGTCCCGCACGGAAATGACATCGCGTCCCTTTTTGAACTTGACGCCACAACTCTGCAGAGAGCTGACTGCCTGGTTCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001804-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.533 C2=0.196
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(15.4=100)
A:
PF0281514=MIR=FE(7.0=100)
C2:
PF0281514=MIR=FE(24.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACAGTGGAACAGCCTGTT
R:
CGAGACCAGCGTGTACATGAT
Band lengths:
136-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]