MmuEX6007908 @ mm9
Exon Skipping
Gene
ENSMUSG00000030287 | Itpr2
Description
inositol 1,4,5-triphosphate receptor 2 [Source:MGI Symbol;Acc:MGI:99418]
Coordinates
chr6:146345435-146363938:-
Coord C1 exon
chr6:146363843-146363938
Coord A exon
chr6:146354280-146354324
Coord C2 exon
chr6:146345435-146345586
Length
45 bp
Sequences
Splice sites
3' ss Seq
AATTTTGCTTTGTTTTTCAGCTT
3' ss Score
9.08
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GTGGTTCACCACGATCCATGCCGCGGAGGTGCGGGACAGTGGAACAGCCTGTTCAGGTTTAAGCATCTTGCCACTGGGAACTACTTAGCTGCAGAG
Seq A exon
CTTAATCCTGACTATCGAGATGCTCAAAATGAAGGAAAAAATGTG
Seq C2 exon
AAAGACGGGGAGATTCCAACACCAAAGAAAAAACGCCAGGCAGGGGAGAAGATCATGTACACCCTGGTTTCAGTCCCACACGGAAATGACATCGCGTCCCTTTTTGAACTTGATGCCACAACTCTGCAGAGAGCCGACTGCCTGGTTCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030287-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.600 C2=0.188
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(15.4=100)
A:
PF0281514=MIR=FE(7.0=100)
C2:
PF0281514=MIR=PU(32.4=96.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCATCTTGCCACTGGGAAC
R:
ACGCGATGTCATTTCCGTGTG
Band lengths:
133-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: