GgaEX0020778 @ galGal3
Exon Skipping
Gene
ENSGALG00000014071 | ITPR2
Description
NA
Coordinates
chr1:70005725-70035636:-
Coord C1 exon
chr1:70035541-70035636
Coord A exon
chr1:70017676-70017720
Coord C2 exon
chr1:70005725-70005879
Length
45 bp
Sequences
Splice sites
3' ss Seq
TAACTTCTTTTCTTTTCCAGCTT
3' ss Score
10
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTTGTCCATCATGATCCTTGCCGGGGAGGGGCAGGACAGTGGAATAGCTTGTTTAGATTTAAGCACTTGGCAACTGGAAACTACTTAGCTGCAGAG
Seq A exon
CTTAATCCACACTATCCAGAAGGTAATAATGAAGGAAAAGCTTTG
Seq C2 exon
CAGAGAGATGGCGACCTTCCTGCTTCAAAGAAGAAACGCCAGGCAGGGGAGAAGATTATGTATACTTTGGTCTCTGTGCCACATGGAAATGACATCGCGTCTCTCTTTGAACTGGATGCCACCACTCTTCAGAGAGCTGATTGCCTGGTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014071_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.800 C2=0.176
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(15.4=100)
A:
PF0281514=MIR=FE(7.0=100)
C2:
PF0281514=MIR=FE(24.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCATCATGATCCTTGCCGG
R:
TGCCTGGCGTTTCTTCTTTGA
Band lengths:
138-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]