BtaEX0018656 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021687 | JADE2
Description
jade family PHD finger 2 [Source:HGNC Symbol;Acc:HGNC:22984]
Coordinates
chr7:47693853-47699037:+
Coord C1 exon
chr7:47693853-47693970
Coord A exon
chr7:47696838-47696966
Coord C2 exon
chr7:47698229-47699037
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTTTCCCTGATGCAGAGC
3' ss Score
8.93
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GTTAGAAATCTGTGCTACATGGTGACAAGGCGCGAGAGAACGAAACATGCCATCTGCAAGCTCCAGGAGCAGATATTCCACCTGCAGATGAAACTTATCGAACAGGATCTGTGTCGAG
Seq A exon
AGCGGTCTGGGAGGAAAACAAAGGGCAAGAAGAGCGACTCAAAAAGAAAAGGCCGCGAGGGCCCCAAGGGCAGCCCCGAGAAGAAAGAGAAAGTGAAGGCAGGGTCCGACTCAGTCCTGGGGCAGCTTG
Seq C2 exon
GTCTGTCTACCTCGTTCCCCATCGACGGCACCTTCTTCAACAGCTGGCTGGCGCAGTCAGTGCAGATCACCGCAGAGAACATGGCCATGAGTGAGTGGTCGCTCAACAATGGGCACCGCGAAGACCCCGCCCCAGGGTTGCTGTCCGAGGAGCTGCTGCAGGACGAGGAGACACTGCTGAGCTTCATGCGGGAGCCCTCGCTGCGACCTGGCGACCCTGCCAGGAAGGCCCGTGGCCGCACCCGCCTGCCTGCTAAGAAGAAACCACCACAGGACGGGCCCGGTTCACGGACGACTCCAGACAAACCCCCCAAGAAGCCCTGGGGCCAGGATACTGGCAGCAGCAAAGGGGGTCAAGGGCCACCTGCCAGGAAGCCACCACGGCGAACACCTTCTCACCTGCCGTCCAGCCCTACAGCTGGGGACTGTCCCATCCCAGCAGCTCCTGAGAGCCCCCCACCACTGGCCCCCGAGACCCCAGAGGAGGCAGCCCCAGTGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021687_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.804 C2=0.907
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCAGATATTCCACCTGCA
R:
GCATGAAGCTCAGCAGTGTCT
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development