GgaEX0009150 @ galGal3
Exon Skipping
Gene
ENSGALG00000006424 | PHF15
Description
NA
Coordinates
chr13:16184416-16193610:-
Coord C1 exon
chr13:16193493-16193610
Coord A exon
chr13:16189822-16189950
Coord C2 exon
chr13:16184416-16188227
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCTAAAAAATGCCAGAAC
3' ss Score
2.55
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GTTAGAAATCTCTGTTACATGGTGACGAGACGGGAGAAAATGAAGCACACCATTTGTAAACTCCAGGAGCAGATCTTCCACCTGCAGATGATACTCATTGAGAAGGACCTTTACCCAG
Seq A exon
AACAAACTGGGAAGAAGACAAAGGGTAAGAAAAGTGATCCGAGAAGGAAAGGAAGAGATGGTAGAAAAAATAGCCCTGAGAAGAAAGAAAAAAGGAAATCAGTCAACGAAACTGTGTTGGGACAACTGG
Seq C2 exon
GCTTGTCGACTTCCTTCCCCATCGATGGGACCTTCTTCAACAGCTGGCTGGCGCAGTCGGTGCAGATCACGGCCGAGAACATGGCCATGAGCGAGTGGTCCCTGAACAACGCGCACCACGAGGACAGCACGCCCGGCCTGTCCGAGGAGCTGCTCCAGGACGAGGAGACGCTGCTCAGCTTCATGATGGACCACTCCCTGAGGTCCCCCTTCAAACAGAGCGAGGCCGCCAAGAAAGTGAAAAGCAAAACAAGAACGAACACTAAGAAAAAGCCGCCCCGGAGCGGCCTGACCGCCGTGTTCAGGAGCCAGCAGGAGGGCTCGGAGCGGTGGACTAACCACGGCAGCGACCTGTCAGACGATGCTGCCAAGCCCTGTGCCCAGGAATCGCGGCCCGGCAGGTCGGAGAAAGGGGCGGCGAGGCCCGCGGACCGCAGGGGATCGGGCGAGGCGAAAAGGGCGGCGAGGAGGGGGCCCGGCCCCAAAGGCAACGACCCGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006424_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.841 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGATCTTCCACCTGCAGA
R:
CCTCAGGGAGTGGTCCATCAT
Band lengths:
254-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]