MmuEX6085276 @ mm9
Exon Skipping
Gene
ENSMUSG00000020387 | Phf15
Description
PHD finger protein 15 [Source:MGI Symbol;Acc:MGI:1924151]
Coordinates
chr11:51626957-51634698:-
Coord C1 exon
chr11:51634581-51634698
Coord A exon
chr11:51631999-51632130
Coord C2 exon
chr11:51626957-51631202
Length
132 bp
Sequences
Splice sites
3' ss Seq
TAACTCTTTCTCCAACACAGAGC
3' ss Score
6.67
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GTAAGGAACCTGTGCTACATGGTGACAAGACGGGAGAGAACGAAACACACCATCTGTAAACTTCAGGAGCAGATATTCCATCTACAGATGAAACTTATTGAGCAAGACCTTTGCAGAG
Seq A exon
AGCCTTCTGGGAGGAGGTCAAAGGGCAAGAAGAATGATTCAAAAAGGAAAGGCCGAGAGGGTCCCAAGGGCAGCAGCCCTGAGAAGAAAGAGAAAGTGAAGGCTGGGCCCGAGTCTGTGCTGGGGCAGCTGG
Seq C2 exon
GTCTATCCACCTCGTTCCCCATCGACGGCACTTTCTTCAACAGCTGGTTGGCACAGTCGGTTCAGATCACAGCAGAGGACATGGCCATGAGCGAGTGGTCTTTGAACAGTGGGCACCGGGAGGATCCTGCTCCAGGTCTGCTGTCAGAGGAATTGCTACAAGATGAGGAGACGCTGCTCAGCTTCATGAGGGACCCCTCGCTACGACCTGGTGACCCTGCCAGAAAGGCCCGAGGCCGCACTCGCCTGCCTGCCAAGAAGAAACCATCCCCGCTGCAGGATGGGCCCAGTGCACGGACCACTCCAGACAAGCAACCCAAGAAGGCCTGGGCCCAGGATGGCAAGGGGACGCAAGGACCACCCATGAGGAAGCCACCACGGAGGACGTCTTCTCATTTGCCGTCCAGCCCTGCAGCTGGGGACTGTCCAGTCCCAGCAACACTGGAAAGCCCTCCACCACTGGCCTCCGAGATACTAGACAAGACAGCCCCCATGGCTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020387-'15-13,'15-12,16-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.919 C2=0.883
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAAGACGGGAGAGAACGA
R:
TTCCTCTGACAGCAGACCTGG
Band lengths:
248-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: