MmuEX6085276 @ mm10
Exon Skipping
Gene
ENSMUSG00000020387 | Jade2
Description
jade family PHD finger 2 [Source:MGI Symbol;Acc:MGI:1924151]
Coordinates
chr11:51816982-51821196:-
Coord C1 exon
chr11:51821079-51821196
Coord A exon
chr11:51818497-51818628
Coord C2 exon
chr11:51816982-51817657
Length
132 bp
Sequences
Splice sites
3' ss Seq
TAACTCTTTCTCCAACACAGAGC
3' ss Score
6.67
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GTAAGGAACCTGTGCTACATGGTGACAAGACGGGAGAGAACGAAACACACCATCTGTAAACTTCAGGAGCAGATATTCCATCTACAGATGAAACTTATTGAGCAAGACCTTTGCAGAG
Seq A exon
AGCCTTCTGGGAGGAGGTCAAAGGGCAAGAAGAATGATTCAAAAAGGAAAGGCCGAGAGGGTCCCAAGGGCAGCAGCCCTGAGAAGAAAGAGAAAGTGAAGGCTGGGCCCGAGTCTGTGCTGGGGCAGCTGG
Seq C2 exon
CTGGTTGGCACAGTCGGTTCAGATCACAGCAGAGGACATGGCCATGAGCGAGTGGTCTTTGAACAGTGGGCACCGGGAGGATCCTGCTCCAGGTCTGCTGTCAGAGGAATTGCTACAAGATGAGGAGACGCTGCTCAGCTTCATGAGGGACCCCTCGCTACGACCTGGTGACCCTGCCAGAAAGGCCCGAGGCCGCACTCGCCTGCCTGCCAAGAAGAAACCATCCCCGCTGCAGGATGGGCCCAGTGCACGGACCACTCCAGACAAGCAACCCAAGAAGGCCTGGGCCCAGGATGGCAAGGGGACGCAAGGACCACCCATGAGGAAGCCACCACGGAGGACGTCTTCTCATTTGCCGTCCAGCCCTGCAGCTGGGGACTGTCCAGTCCCAGCAACACTGGAAAGCCCTCCACCACTGGCCTCCGAGATACTAGACAAGACAGCCCCCATGGCTTCCGACTTAAATGTCCAAGTGCCTGGCCCTACAGTGAGCCCCAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020387_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=0.924 C2=0.133
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAAGACGGGAGAGAACGA
R:
GTCCCTCATGAAGCTGAGCAG
Band lengths:
247-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types