RnoEX0045538 @ rn6
Exon Skipping
Gene
ENSRNOG00000004956 | Jade2
Description
jade family PHD finger 2 [Source:RGD Symbol;Acc:1309152]
Coordinates
chr10:37270183-37274601:-
Coord C1 exon
chr10:37274484-37274601
Coord A exon
chr10:37272057-37272188
Coord C2 exon
chr10:37270183-37271397
Length
132 bp
Sequences
Splice sites
3' ss Seq
ACTCCCCTTCTCTAACACAGAGC
3' ss Score
7.43
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GTGAGGAACCTGTGCTACATGGTGACAAGGCGGGAGAGAACGAAGCACACCATCTGTAAGCTTCAGGAGCAGATATTCCATCTGCAGATGAAACTCATTGAGCAAGATCTTTGCAGAG
Seq A exon
AGCCTTCTGGGAGGAGATCAAAGGGCAAGAAGAATGACTCAAAAAGGAAAGGCCGAGAGGGTCCCAAGGGCAGCAGCCCTGAGAAGAAAGAAAAAATGAAGGCTGGGCCGGAGTCTGTGCTGGGGCAGCTGG
Seq C2 exon
GTCTGTCCACCTCGTTCCCCATCGATGGCACTTTCTTCAACAGCTGGTTGGCACAGTCTGTTCAGATCACAGCCGAGGACATGGCCATGAGCGAGTGGTCTTTGAACAGTGGGCACCGGGAGGATCCTGCTCCGGGTCTGCTGTCAGAGGAATTGCTACAAGATGAGGAAACACTGCTCAGCTTCATGAGGGACCCCTCGCTACGACCCGGCGACCCTGCCAGGAAGGCCCGAGGCCGCACTCGCCTGCCTGCCAAGAAGAAACCACCCCCGCTGCAGGATGGGCCCAGTGCACGGACCACTCCAGAAAAGCCAGCCAAGAAGGCCTGGGCCCAGGACGGCAAGGGCACGCAAGGACCACCCGCGAGGAAGCCACCACGGAGGACGTCTTCTCATTTGCCGTCCAGCCCTGCAGCTGGGGACTGTCCTGTCCCAGCAACACTGGAAAGTCCTCCAACACTGGCCTCCGAGATCCTGGACGAGACAGTCCCCGCGGCTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004956-'25-18,'25-17,27-18
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=0.978 C2=0.899
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAGAACGAAGCACACCAT
R:
AGCAATTCCTCTGACAGCAGAC
Band lengths:
243-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]