DreEX6086248 @ danRer10
Exon Skipping
Gene
ENSDARG00000053389 | jade2
Description
jade family PHD finger 2 [Source:ZFIN;Acc:ZDB-GENE-120215-66]
Coordinates
chr21:45358868-45370257:+
Coord C1 exon
chr21:45358868-45358985
Coord A exon
chr21:45365213-45365341
Coord C2 exon
chr21:45369145-45370257
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTTTTATATTCTGTACACAGAAA
3' ss Score
7.78
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GTCAGAAATCTGTGCTGCATGATCACACGCAGAGAGAAGATCAAGCACTCTTTATGTAACCTGCAGGAGAAGATCTTTTCATTGCAGATTCAGCTCATGGAGCAGAACCTGGTCGGAG
Seq A exon
AAAAATCTCAGAGAGGCGAAAGGAAGCATCGCAATAGAGTCCAGGAACGAGTAAAGGAAAGGAGGAAGAATAGTCCAGAAAAGAAAGACAAGTGGAGATCAGATGACAACTCTCTTTTCTCACAGCTGG
Seq C2 exon
GTTTCTCCAGATCGTTCCCCATAGACGGCTCGCTGTTCGACAGCTGGCAGGCTCAGTCCATCCACATCTCAGCGGAGAGCATGCTGAGCCGCTGGTCTCTGTCTGCCGGGACGCCCGAAACCTCGGCCAGCCTGCTGTCAGACCAGCTGCTCCGAGGCGAGGAGAGCCTGCTTAGCCTCATGATGGACTCCTCCATGCAGAACACCTGGAAGACACCCCGACTAGGACGTAAACACCCCAAAAGTGCACCCCGCAGCCGCCGGAAGACCCTCTGCTCTCCACCTGCTAAAGGTAAAGTGTGTGTGACAGAGCGGCGGTGTAGACGCGGAGAAAAAACGGAGGATTTCCAGCGCAGCAGCGACGGCAGGTCAGACCCTTTACAGCCCGCCATCGCCAAAATGGACTCGTGCCACATTTCAGAAGAGCGAGATTCAGTGCTGGAGAAACGCTCGCAGAAGAGCGTACGCATGCATCTGCCCAGACAGAGCAAGACCCGCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053389-'11-12,'11-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.773 C2=0.726
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSDART00000075432fB3365
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATGGAGCAGAACCTGGT
R:
TTACGTCCTAGTCGGGGTGTC
Band lengths:
257-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]