BtaEX0019992 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006987 | LASS3
Description
Bos taurus ceramide synthase 3 (CERS3), mRNA. [Source:RefSeq mRNA;Acc:NM_001099389]
Coordinates
chr21:6262124-6300238:+
Coord C1 exon
chr21:6262124-6262166
Coord A exon
chr21:6285022-6285195
Coord C2 exon
chr21:6300121-6300238
Length
174 bp
Sequences
Splice sites
3' ss Seq
TTCTTGTTTCATCTTTTTAGAAT
3' ss Score
10.32
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
TTCACAAGCCAGGGGCATCTTTGTGCACTGAAGTTTCAGAAAG
Seq A exon
AATGTTTCAGACATTTAAAGAATGGTTTTGGTTGGAAAGATTCTGGCTTCCTCCAACAGTAAAATGGTCAGATCTTGAAGATCACGATGGACTCATCTTTGTGAAGCCCTCTCATTTATATATGACCATTCCATATGCTTTTGTCTTGATAATTATCAGACATTTTTTTCAAAA
Seq C2 exon
GTTTATTGCTTCACCTCTAGCAAAAACATTTGGCATTAAAGAGGAAGTTCGAAAGAAGATTATACCAAATTCTGTTTTAGAGAATTTTTTCAAACATTCCACAAAGAAACCATCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006987-'0-2,'0-0,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF083906=TRAM1=PU(52.6=34.5)
C2:
PF083906=TRAM1=PD(44.7=42.5),PF0004624=Homeobox=PU(34.0=40.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCATCTTTGTGCACTGAA
R:
TGAGATGGTTTCTTTGTGGAATGT
Band lengths:
149-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development