HsaEX0035428 @ hg19
Exon Skipping
Gene
ENSG00000154227 | LASS3
Description
ceramide synthase 3 [Source:HGNC Symbol;Acc:23752]
Coordinates
chr15:101031022-101061961:-
Coord C1 exon
chr15:101061872-101061961
Coord A exon
chr15:101041882-101042055
Coord C2 exon
chr15:101031022-101031136
Length
174 bp
Sequences
Splice sites
3' ss Seq
GTCTGTTTCCATTTCTCTAGAAT
3' ss Score
9.2
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GGATGTTGTGAAACAAAAGCTGACATTTATATATATATACATATATACAGTATTTGAGTTCCTCAGTAGAAAGCTATCATATATACTCAG
Seq A exon
AATGTTTTGGACGTTTAAAGAATGGTTCTGGTTGGAAAGATTCTGGCTTCCTCCAACAATAAAGTGGTCAGATCTTGAGGATCACGATGGACTCGTCTTTGTAAAACCTTCTCATTTATACGTGACAATTCCATATGCTTTTCTCTTGCTGATTATCAGACGTGTATTTGAAAA
Seq C2 exon
ATTTGTTGCTTCACCTCTAGCAAAATCATTTGGCATTAAAGAGACAGTTCGAAAGGTTACACCAAATACTGTCTTAGAGAATTTTTTCAAACATTCCACAAGGCAACCATTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154227_MULTIEX1-4/12=2-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0004624=Homeobox=PU(44.6=64.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGTTGTGAAACAAAAGCTGACA
R:
CAATGGTTGCCTTGTGGAATGT
Band lengths:
202-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)