MmuEX6011431 @ mm9
Exon Skipping
Gene
ENSMUSG00000030510 | Lass3
Description
LAG1 homolog, ceramide synthase 3 [Source:MGI Symbol;Acc:MGI:2681008]
Coordinates
chr7:73888390-73918590:+
Coord C1 exon
chr7:73888390-73888637
Coord A exon
chr7:73909061-73909234
Coord C2 exon
chr7:73918476-73918590
Length
174 bp
Sequences
Splice sites
3' ss Seq
CCTTTTCTTCATTGTTCTAGAAT
3' ss Score
9.6
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
AGGAAGCGGCATCCCAGCTGGAAGAACCTGAAGGTGCCATCCAGTAGCTTTGCCTCACGTGACTAACTGCCCTCAGTCAGAAATCTTGACTTGCAACTTTCGAGGGTGGGTCTCTGCAAGAATTTCAGGGCTTACGTATAGATGAGGTGTGTTGCTCTTGAGAACAAAGCTGCCTGGAACGGGAAGCCTCTCCAGTTGCTCCCCACAGGCGAGGAGTATCCTGTGCAGACTGGCGCTTTGGGAAGAAG
Seq A exon
AATGTTTCAGACGTTTAGAAAATGGTTCTGGTCGGAGAGATACTGGCTTCCTCCAACAATAAAGTGGTCAGACCTGGAAGATCATGATGGGCTTGTCTTCGTGAAAGCTTCCCACTTATACATCACAATTCCATATGCCTTTCTTTTAATGGTCGTCAGATACTTCTTTGAAAA
Seq C2 exon
GTTTGTTGCTACACCTCTAGCAAATGCACTTGGCATTAAAAAGACACAGCACAAAATTAAACCAAATGCCATCTTAGAGAATTTTTTCAAGCATTCCACAAGCAAACCATCACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030510-'0-1,'0-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0004624=Homeobox=PU(51.6=82.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGGTGCCATCCAGTAGCT
R:
GCCAAGTGCATTTGCTAGAGG
Band lengths:
254-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: