HsaEX0035428 @ hg38
Exon Skipping
Gene
ENSG00000154227 | CERS3
Description
ceramide synthase 3 [Source:HGNC Symbol;Acc:HGNC:23752]
Coordinates
chr15:100490817-100521756:-
Coord C1 exon
chr15:100521667-100521756
Coord A exon
chr15:100501677-100501850
Coord C2 exon
chr15:100490817-100490931
Length
174 bp
Sequences
Splice sites
3' ss Seq
GTCTGTTTCCATTTCTCTAGAAT
3' ss Score
9.2
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GGATGTTGTGAAACAAAAGCTGACATTTATATATATATACATATATACAGTATTTGAGTTCCTCAGTAGAAAGCTATCATATATACTCAG
Seq A exon
AATGTTTTGGACGTTTAAAGAATGGTTCTGGTTGGAAAGATTCTGGCTTCCTCCAACAATAAAGTGGTCAGATCTTGAGGATCACGATGGACTCGTCTTTGTAAAACCTTCTCATTTATACGTGACAATTCCATATGCTTTTCTCTTGCTGATTATCAGACGTGTATTTGAAAA
Seq C2 exon
ATTTGTTGCTTCACCTCTAGCAAAATCATTTGGCATTAAAGAGACAGTTCGAAAGGTTACACCAAATACTGTCTTAGAGAATTTTTTCAAACATTCCACAAGGCAACCATTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154227_MULTIEX1-4/13=2-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0004624=Homeobox=PU(44.6=64.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGTTGTGAAACAAAAGCTGACA
R:
CAATGGTTGCCTTGTGGAATGT
Band lengths:
202-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development