MmuEX6011431 @ mm10
Exon Skipping
Gene
ENSMUSG00000030510 | Cers3
Description
ceramide synthase 3 [Source:MGI Symbol;Acc:MGI:2681008]
Coordinates
chr7:66743504-66773704:+
Coord C1 exon
chr7:66743504-66743751
Coord A exon
chr7:66764175-66764348
Coord C2 exon
chr7:66773590-66773704
Length
174 bp
Sequences
Splice sites
3' ss Seq
CCTTTTCTTCATTGTTCTAGAAT
3' ss Score
9.6
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
AGGAAGCGGCATCCCAGCTGGAAGAACCTGAAGGTGCCATCCAGTAGCTTTGCCTCACGTGACTAACTGCCCTCAGTCAGAAATCTTGACTTGCAACTTTCGAGGGTGGGTCTCTGCAAGAATTTCAGGGCTTACGTATAGATGAGGTGTGTTGCTCTTGAGAACAAAGCTGCCTGGAACGGGAAGCCTCTCCAGTTGCTCCCCACAGGCGAGGAGTATCCTGTGCAGACTGGCGCTTTGGGAAGAAG
Seq A exon
AATGTTTCAGACGTTTAGAAAATGGTTCTGGTCGGAGAGATACTGGCTTCCTCCAACAATAAAGTGGTCAGACCTGGAAGATCATGATGGGCTTGTCTTCGTGAAAGCTTCCCACTTATACATCACAATTCCATATGCCTTTCTTTTAATGGTCGTCAGATACTTCTTTGAAAA
Seq C2 exon
GTTTGTTGCTACACCTCTAGCAAATGCACTTGGCATTAAAAAGACACAGCACAAAATTAAACCAAATGCCATCTTAGAGAATTTTTTCAAGCATTCCACAAGCAAACCATCACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030510-'0-3,'0-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0004624=Homeobox=PU(51.6=82.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGGTGCCATCCAGTAGCT
R:
GCCAAGTGCATTTGCTAGAGG
Band lengths:
254-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types