DreEX6064197 @ danRer10
Exon Skipping
Gene
ENSDARG00000036337 | cers3b
Description
ceramide synthase 3b [Source:ZFIN;Acc:ZDB-GENE-080220-32]
Coordinates
chr18:7350120-7352072:+
Coord C1 exon
chr18:7350120-7350334
Coord A exon
chr18:7351595-7351762
Coord C2 exon
chr18:7351955-7352072
Length
168 bp
Sequences
Splice sites
3' ss Seq
GGCTGTTGTGTTATTTGCAGGGC
3' ss Score
8.68
5' ss Seq
AAGGTACAC
5' ss Score
7.56
Exon sequences
Seq C1 exon
CACTCAAGCGGTTCAATGAGCTCTTTGTGGAGGGTTAAGGTATGCAGTGTAAGTGTGTGTGAGAGAGTTTACTTGTTCTGTTAGTACCTAGCGGATTTACCTAGCAGACTGGGCACAGCTTGGTTAAAGGTGCGTGTGAGCGGAATTACAACAGATGAAAAAAAGGAGAAAGGTGTGTAAACACAAGAAACGGACAAACTTTAAGCGGATAGAAG
Seq A exon
GGCGATGCTCAGTGAGTGGTTTTGGTGGGACCGGCTGTGGTTGCCGAGGCCGGTGACGTGGGCGGATCTACAGGACAGTGAGGGGTGTGTCTACGCACGTGCCTCCCACTTGTACATCATTCTACCTGTTGCAGTGCTGCTGCTCGGCTTAAGAGCATTATATGAAAG
Seq C2 exon
GCTGATAGCAGTGCCACTCGCTCAGGCTCTTGGAGTTAAAGACAAAATTCGCAAGAGAGCATCACACAACCCACTACTGGAAACATACTACAGAACACACTCTAAACACCCAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036337-'0-2,'0-1,1-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF101834=ESSS=PU(29.1=75.0),PF0004624=Homeobox=PU(41.5=55.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCAAGCGGTTCAATGAGCT
R:
TAACTCCAAGAGCCTGAGCGA
Band lengths:
252-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]