RnoEX0020308 @ rn6
Exon Skipping
Gene
ENSRNOG00000013823 | Cers3
Description
ceramide synthase 3 [Source:RGD Symbol;Acc:1564356]
Coordinates
chr1:127648234-127715300:+
Coord C1 exon
chr1:127648234-127648258
Coord A exon
chr1:127706620-127706793
Coord C2 exon
chr1:127715186-127715300
Length
174 bp
Sequences
Splice sites
3' ss Seq
CCTTTTCTTCATTTGTCTAGAAT
3' ss Score
7.09
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
CTTCTTCTCAAGGGACTGGAAAGAG
Seq A exon
AATGTTTTACAGGTTTAGAAAATGGTTCTGGTCGGAGAGATTCTGGCTTCCTCCGACAATAAAGTGGTCAGACCTGGAAGATCATGAAGGACTGGTCTTTGTGAAAGCGTCCCACTTGTATATCACAATTCCGTATGCCCTTCTCTTACTGGTCGTCAGATACTTCTTTGAAAA
Seq C2 exon
GTTTGTTGCCACACCTCTAGCCAATGCACTTGGCATTCAAAAGGCACAGCATAAAATTAAACCAAATGCCATCTTAGAGAATTTTTTCCAGCATTCCACAAGTCAACCGTCACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013823-'0-2,'0-0,5-2
Average complexity
C1
Mappability confidence:
67%=100=25%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0004624=Homeobox=PU(44.6=64.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCTCAAGGGACTGGAAAGAG
R:
ATGTGACGGTTGACTTGTGGA
Band lengths:
138-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]