BtaEX0021012 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021024 | MACF1
Description
microtubule-actin crosslinking factor 1 [Source:HGNC Symbol;Acc:HGNC:13664]
Coordinates
chr3:107199931-107201522:-
Coord C1 exon
chr3:107201359-107201522
Coord A exon
chr3:107200778-107200789
Coord C2 exon
chr3:107199931-107200093
Length
12 bp
Sequences
Splice sites
3' ss Seq
ATTTGTGCATATCAAAGCAGCTA
3' ss Score
1.67
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
GGAAGTCCTTGAGTCAGCCTGCCCCTCCTCCCATGCCAATCCTCTCACAGTCTGAAGCAAAAAATCCACGGATCAACCAGCTCTCTGGGCGCTGGCAGCAGGTGTGGCTGTTGGCGCTGGAGCGGCAGCGGAAGCTGAACGACGCTTTGGACCGGCTGGAGGAG
Seq A exon
CTATGCCCAGAA
Seq C2 exon
TTGAAGGAATTTGCCAACTTTGACTTCGATGTCTGGAGGAAAAAGTATATGCGTTGGATGAATCACAAAAAGTCTCGGGTGATGGATTTCTTCCGGCGAATTGACAAGGACCAGGATGGGAAGATAACCCGTCAGGAGTTTATCGATGGCATTCTAGCATCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021024-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.382 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134991=EF-hand_7=PU(54.2=70.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCTGAACGACGCTTTGGA
R:
ACTTTTTGTGATTCATCCAACGCA
Band lengths:
107-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development