RnoEX0051768 @ rn6
Exon Skipping
Gene
ENSRNOG00000016047 | Macf1
Description
microtubule-actin crosslinking factor 1 [Source:RGD Symbol;Acc:1306057]
Coordinates
chr5:141056932-141058989:-
Coord C1 exon
chr5:141058826-141058989
Coord A exon
chr5:141057866-141057877
Coord C2 exon
chr5:141056932-141057094
Length
12 bp
Sequences
Splice sites
3' ss Seq
ATTTGTGCATATCAAAGCAGCTA
3' ss Score
1.67
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
GAAAGTCCTTGAATCAACCCACACCTCCACCCATGCCAATCCTCTCACAGTCTGAAGCAAAAAACCCACGAATCAACCAGCTCTCTGCCCGCTGGCAGCAAGTATGGCTGTTAGCCCTGGAGCGCCAGCGGAAGCTGAACGATGCCTTGGATAGACTGGAGGAG
Seq A exon
CTATGCCCGGAA
Seq C2 exon
TTGAAGGAATTTGCCAACTTTGACTTTGATGTCTGGAGGAAAAAGTATATGCGTTGGATGAATCACAAAAAGTCTCGAGTCATGGATTTCTTCCGGCGTATTGACAAGGACCAGGATGGGAAAATAACACGTCAGGAGTTTATCGATGGCATTTTAGCATCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016047_CASSETTE4
Average complexity
S*
Mappability confidence:
100%=100=50%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.382 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134991=EF-hand_7=PU(54.8=72.7)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCTGAACGATGCCTTGGA
R:
ACTTTTTGTGATTCATCCAACGCA
Band lengths:
107-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]