GgaEX0029075 @ galGal3
Exon Skipping
Gene
ENSGALG00000003693 | MACF1
Description
NA
Coordinates
chr23:5711883-5713077:+
Coord C1 exon
chr23:5711883-5712046
Coord A exon
chr23:5712355-5712369
Coord C2 exon
chr23:5712915-5713077
Length
15 bp
Sequences
Splice sites
3' ss Seq
TTTATTTACGCTTAACAAAGCAG
3' ss Score
-1.47
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
GAAAATCCTTGACCCAGGCCGCCCCCCCCACCATGCCCATCATCTCCCAGTCGGAAACCAAGAACCCCCGCATCAATCAGCTCTCAGCCCGCTGGCAGCAGGTCTGGCTGCTGGCCCTGGAGCGGCAGCGGAAGCTCAACGATGCCCTGGACCGACTGGAGGAG
Seq A exon
CAGCTATGCCCAGAA
Seq C2 exon
CTGAAGGAGTTTGCAAACTTTGATTTCGATGTCTGGCGGAAGAAATACATGCGCTGGATGAACCACAAGAAGTCCCGCGTGATGGATTTCTTCCGGCGCATCGATAAGGACCAGGACGGGAAGATCACCCGGCAGGAGTTCATCGATGGCATCCTGGCCTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003693-MICROEX3
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.382 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(35.6=85.5)
A:
NA
C2:
PF134991=EF-hand_7=PU(54.8=72.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCTCAACGATGCCCTGG
R:
GCGGGACTTCTTGTGGTTCAT
Band lengths:
112-127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]