BtaEX0021374 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010271 | MAPKAP1
Description
Bos taurus mitogen-activated protein kinase associated protein 1 (MAPKAP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001081603]
Coordinates
chr11:96283792-96323385:-
Coord C1 exon
chr11:96323245-96323385
Coord A exon
chr11:96307558-96307695
Coord C2 exon
chr11:96283792-96283889
Length
138 bp
Sequences
Splice sites
3' ss Seq
TCCTCCCCTCGGCCTTATAGGTA
3' ss Score
9.74
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GTTCAAGGGCAGACGGGGTTTTTGAGGAGGATTCGCAGATTGACATAGCTACAGTACAGGATATGTTGAGCAGCCACCACTACAAGTCATTTAAAGTCAGCATGATCCACAGACTCCGCTTCACAACCGACGTCCAGTTAG
Seq A exon
GTATCTCTGGAGACAAAGTGGAGATAGACCCTGTCACGAGTCAGAAAGCCAGCACCAAGTTCTGGATTAAGCAGAAGCCCATCTCGATCGATTCTGACCTGCTCTGTGCCTGTGACCTTGCAGAAGAAAAAAGCCCCA
Seq C2 exon
GTCACGCAATATTTAAACTCACGTATCTAAGCAATCACGACTATAAACACCTCTACTTCGAATCTGACGCCGCTACCGTCAATGAAATCGTGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010271_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF054227=SIN1=FE(10.1=100)
A:
PF054227=SIN1=FE(9.9=100)
C2:
PF054227=SIN1=FE(6.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGGCAGACGGGGTTTTT
R:
TGAGCACGATTTCATTGACGGT
Band lengths:
234-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development