HsaEX6063049 @ hg19
Exon Skipping
Gene
ENSG00000119487 | MAPKAP1
Description
mitogen-activated protein kinase associated protein 1 [Source:HGNC Symbol;Acc:18752]
Coordinates
chr9:128206780-128246862:-
Coord C1 exon
chr9:128246722-128246862
Coord A exon
chr9:128230251-128230388
Coord C2 exon
chr9:128206780-128206877
Length
138 bp
Sequences
Splice sites
3' ss Seq
GTCCTCACCTTGGCTTACAGGTA
3' ss Score
8.23
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GTTCAAGGGCAGACGGGGTTTTTGAGGAGGATTCGCAAATTGACATAGCCACAGTACAGGATATGCTTAGCAGCCACCATTACAAGTCATTCAAAGTCAGCATGATCCACAGACTGCGATTCACAACCGACGTACAGCTAG
Seq A exon
GTATCTCTGGAGACAAAGTAGAGATAGACCCTGTTACGAATCAGAAAGCCAGCACTAAGTTTTGGATTAAGCAGAAACCCATCTCAATCGATTCCGACCTGCTCTGTGCCTGTGACCTTGCTGAAGAGAAAAGCCCCA
Seq C2 exon
GTCACGCAATATTTAAACTCACGTATCTAAGCAATCACGACTATAAACACCTCTACTTTGAATCGGACGCTGCTACCGTCAATGAAATTGTGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119487-'32-36,'32-33,35-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.005 C2=0.000
Domain overlap (PFAM):
C1:
PF054227=SIN1=PD(11.6=10.4),PF054227=SIN1=FE(36.2=100)
A:
PF054227=SIN1=PD(0.1=0.0),PF054227=SIN1=FE(56.8=100)
C2:
PF054227=SIN1=PD(9.1=5.9),PF054227=SIN1=WD(100=97.1)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGGCAGACGGGGTTTTT
R:
TGAGCACAATTTCATTGACGGT
Band lengths:
234-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)